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Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput mRNA sequencing.

Genomics data

Okada T, Takahashi H, Suzuki Y, Sugano S, Noji M, Kenmoku H, Toyota M, Kanaya S, Kawahara N, Asakawa Y, Sekita S.
PMID: 27625990
Genom Data. 2016 Aug 04;10:4-11. doi: 10.1016/j.gdata.2016.08.003. eCollection 2016 Dec.

Ephedra plants are taxonomically classified as gymnosperms, and are medicinally important as the botanical origin of crude drugs and as bioresources that contain pharmacologically active chemicals. Here we show a comparative analysis of the transcriptomes of aerial stems and...

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Okada T, Takahashi H, Suzuki Y, et al. Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput mRNA sequencing. Genom Data. 2016;10:4-11doi: 10.1016/j.gdata.2016.08.003.
Okada, T., Takahashi, H., Suzuki, Y., Sugano, S., Noji, M., Kenmoku, H., Toyota, M., Kanaya, S., Kawahara, N., Asakawa, Y., & Sekita, S. (2016). Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput mRNA sequencing. Genomics data, 104-11. https://doi.org/10.1016/j.gdata.2016.08.003
Okada, Taketo, et al. "Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput mRNA sequencing." Genomics data vol. 10 (2016): 4-11. doi: https://doi.org/10.1016/j.gdata.2016.08.003
Okada T, Takahashi H, Suzuki Y, Sugano S, Noji M, Kenmoku H, Toyota M, Kanaya S, Kawahara N, Asakawa Y, Sekita S. Comparative analysis of transcriptomes in aerial stems and roots of Ephedra sinica based on high-throughput mRNA sequencing. Genom Data. 2016 Aug 04;10:4-11. doi: 10.1016/j.gdata.2016.08.003. eCollection 2016 Dec. PMID: 27625990; PMCID: PMC5011178.
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Neurotranscriptome profiles of multiple zebrafish strains.

Genomics data

Wong RY, Godwin J.
PMID: 26309813
Genom Data. 2015 Sep 01;5:206-209. doi: 10.1016/j.gdata.2015.06.004.

Behavioral displays or physiological responses are often influenced by intrinsic and extrinsic mechanisms in the context of the organism's evolutionary history. Understanding differences in transcriptome profiles can give insight into adaptive or pathological responses. We utilize high throughput sequencing...

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Wong RY, Godwin J. Neurotranscriptome profiles of multiple zebrafish strains. Genom Data. 2015;5:206-209doi: 10.1016/j.gdata.2015.06.004.
Wong, R. Y., & Godwin, J. (2015). Neurotranscriptome profiles of multiple zebrafish strains. Genomics data, 5206-209. https://doi.org/10.1016/j.gdata.2015.06.004
Wong, Ryan Y, and Godwin, John. "Neurotranscriptome profiles of multiple zebrafish strains." Genomics data vol. 5 (2015): 206-209. doi: https://doi.org/10.1016/j.gdata.2015.06.004
Wong RY, Godwin J. Neurotranscriptome profiles of multiple zebrafish strains. Genom Data. 2015 Sep 01;5:206-209. doi: 10.1016/j.gdata.2015.06.004. PMID: 26309813; PMCID: PMC4542015.
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Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia.

Genomics data

Gibtan A, Woo M, Oh D, Park K, Lee HS, Sohn JH, Lee DW, Shin JK, Lee SJ.
PMID: 27668183
Genom Data. 2016 Aug 30;10:30-2. doi: 10.1016/j.gdata.2016.08.014. eCollection 2016 Dec.

The draft genome sequence of Halorubrum sp. SAH-A6, isolated from commercial rock salts of the Danakil depression, Ethiopia. The genome comprised 3,325,770 bp, with the G + C content of 68.0%. The strain has many genes which are responsible...

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Gibtan A, Woo M, Oh D, et al. Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia. Genom Data. 2016;10:30-2doi: 10.1016/j.gdata.2016.08.014.
Gibtan, A., Woo, M., Oh, D., Park, K., Lee, H. S., Sohn, J. H., Lee, D. W., Shin, J. K., & Lee, S. J. (2016). Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia. Genomics data, 1030-2. https://doi.org/10.1016/j.gdata.2016.08.014
Gibtan, Ashagrie, et al. "Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia." Genomics data vol. 10 (2016): 30-2. doi: https://doi.org/10.1016/j.gdata.2016.08.014
Gibtan A, Woo M, Oh D, Park K, Lee HS, Sohn JH, Lee DW, Shin JK, Lee SJ. Draft genome sequence of the extremely halophilic Halorubrum sp. SAH-A6 isolated from rock salts of the Danakil depression, Ethiopia. Genom Data. 2016 Aug 30;10:30-2. doi: 10.1016/j.gdata.2016.08.014. eCollection 2016 Dec. PMID: 27668183; PMCID: PMC5024332.
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De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit.

Genomics data

Matra DD, Kozaki T, Ishii K, Poerwanto R, Inoue E.
PMID: 27668185
Genom Data. 2016 Sep 09;10:35-7. doi: 10.1016/j.gdata.2016.09.003. eCollection 2016 Dec.

Garcinia mangostana L. (Mangosteen), of the family Clusiaceae, is one of the economically important tropical fruits in Indonesia. In the present study, we performed de novo transcriptomic analysis of Garcinia mangostana L. through RNA-Seq technology. We obtained the raw...

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Matra DD, Kozaki T, Ishii K, et al. De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit. Genom Data. 2016;10:35-7doi: 10.1016/j.gdata.2016.09.003.
Matra, D. D., Kozaki, T., Ishii, K., Poerwanto, R., & Inoue, E. (2016). De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit. Genomics data, 1035-7. https://doi.org/10.1016/j.gdata.2016.09.003
Matra, Deden Derajat, et al. "De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit." Genomics data vol. 10 (2016): 35-7. doi: https://doi.org/10.1016/j.gdata.2016.09.003
Matra DD, Kozaki T, Ishii K, Poerwanto R, Inoue E. De novo transcriptome assembly of mangosteen (Garcinia mangostana L.) fruit. Genom Data. 2016 Sep 09;10:35-7. doi: 10.1016/j.gdata.2016.09.003. eCollection 2016 Dec. PMID: 27668185; PMCID: PMC5024146.
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Coronary Artery Disease Associated Transcription Factor TCF21 Regulates Smooth Muscle Precursor Cells that Contribute to the Fibrous Cap.

Genomics data

Nurnberg ST, Cheng K, Raiesdana A, Kundu R, Miller CL, Kim JB, Arora K, Carcamo-Oribe I, Xiong Y, Tellakula N, Nanda V, Murthy N, Boisvert WA, Hedin U, Perisic L, Aldi S, Maegdefessel L, Pjanic M, Owens GK, Tallquist MD, Quertermous T.
PMID: 26090325
Genom Data. 2015 Sep 01;5:36-37. doi: 10.1016/j.gdata.2015.05.007.

TCF21 is a basic helix-loop-helix transcription factor that has recently been implicated as contributing to susceptibility to coronary heart disease based on genome wide association studies. In order to identify transcriptionally regulated target genes in a major disease relevant...

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Nurnberg ST, Cheng K, Raiesdana A, et al. Coronary Artery Disease Associated Transcription Factor TCF21 Regulates Smooth Muscle Precursor Cells that Contribute to the Fibrous Cap. Genom Data. 2015;5:36-37doi: 10.1016/j.gdata.2015.05.007.
Nurnberg, S. T., Cheng, K., Raiesdana, A., Kundu, R., Miller, C. L., Kim, J. B., Arora, K., Carcamo-Oribe, I., Xiong, Y., Tellakula, N., Nanda, V., Murthy, N., Boisvert, W. A., Hedin, U., Perisic, L., Aldi, S., Maegdefessel, L., Pjanic, M., Owens, G. K., Tallquist, M. D., & Quertermous, T. (2015). Coronary Artery Disease Associated Transcription Factor TCF21 Regulates Smooth Muscle Precursor Cells that Contribute to the Fibrous Cap. Genomics data, 536-37. https://doi.org/10.1016/j.gdata.2015.05.007
Nurnberg, S T, et al. "Coronary Artery Disease Associated Transcription Factor TCF21 Regulates Smooth Muscle Precursor Cells that Contribute to the Fibrous Cap." Genomics data vol. 5 (2015): 36-37. doi: https://doi.org/10.1016/j.gdata.2015.05.007
Nurnberg ST, Cheng K, Raiesdana A, Kundu R, Miller CL, Kim JB, Arora K, Carcamo-Oribe I, Xiong Y, Tellakula N, Nanda V, Murthy N, Boisvert WA, Hedin U, Perisic L, Aldi S, Maegdefessel L, Pjanic M, Owens GK, Tallquist MD, Quertermous T. Coronary Artery Disease Associated Transcription Factor TCF21 Regulates Smooth Muscle Precursor Cells that Contribute to the Fibrous Cap. Genom Data. 2015 Sep 01;5:36-37. doi: 10.1016/j.gdata.2015.05.007. PMID: 26090325; PMCID: PMC4467834.
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RNA-Seq analysis of urea nutrition responsive transcriptome of Oryza sativa elite indica cultivar RP Bio 226.

Genomics data

Reddy MM, Ulaganathan K.
PMID: 26697348
Genom Data. 2015 Aug 28;6:112-3. doi: 10.1016/j.gdata.2015.08.025. eCollection 2015 Dec.

Rice yield is greatly influenced by the nitrogen and rice varieties show variation in yield. For understanding the role of urea nutrition in the yield of elite indica rice cultivar RPBio-226, the urea responsive transcriptome was sequenced and analyzed....

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Reddy MM, Ulaganathan K. RNA-Seq analysis of urea nutrition responsive transcriptome of Oryza sativa elite indica cultivar RP Bio 226. Genom Data. 2015;6:112-3doi: 10.1016/j.gdata.2015.08.025.
Reddy, M. M., & Ulaganathan, K. (2015). RNA-Seq analysis of urea nutrition responsive transcriptome of Oryza sativa elite indica cultivar RP Bio 226. Genomics data, 6112-3. https://doi.org/10.1016/j.gdata.2015.08.025
Reddy, Mettu Madhavi, and Ulaganathan, Kandasamy. "RNA-Seq analysis of urea nutrition responsive transcriptome of Oryza sativa elite indica cultivar RP Bio 226." Genomics data vol. 6 (2015): 112-3. doi: https://doi.org/10.1016/j.gdata.2015.08.025
Reddy MM, Ulaganathan K. RNA-Seq analysis of urea nutrition responsive transcriptome of Oryza sativa elite indica cultivar RP Bio 226. Genom Data. 2015 Aug 28;6:112-3. doi: 10.1016/j.gdata.2015.08.025. eCollection 2015 Dec. PMID: 26697348; PMCID: PMC4664710.
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Third party data gene data set of eutherian growth hormone genes.

Genomics data

Premzl M.
PMID: 26697363
Genom Data. 2015 Sep 11;6:166-9. doi: 10.1016/j.gdata.2015.09.007. eCollection 2015 Dec.

Among 146 potential coding sequences, the most comprehensive eutherian growth hormone gene data set annotated 100 complete coding sequences. The eutherian comparative genomic analysis protocol first described 5 major gene clusters of eutherian growth hormone genes. The present updated...

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Premzl M. Third party data gene data set of eutherian growth hormone genes. Genom Data. 2015;6:166-9doi: 10.1016/j.gdata.2015.09.007.
Premzl, M. (2015). Third party data gene data set of eutherian growth hormone genes. Genomics data, 6166-9. https://doi.org/10.1016/j.gdata.2015.09.007
Premzl, Marko. "Third party data gene data set of eutherian growth hormone genes." Genomics data vol. 6 (2015): 166-9. doi: https://doi.org/10.1016/j.gdata.2015.09.007
Premzl M. Third party data gene data set of eutherian growth hormone genes. Genom Data. 2015 Sep 11;6:166-9. doi: 10.1016/j.gdata.2015.09.007. eCollection 2015 Dec. PMID: 26697363; PMCID: PMC4664738.
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Expression data from primary culture human myometrial cells.

Genomics data

Lei K, Sooranna SR, Johnson MR.
PMID: 26697367
Genom Data. 2015 Sep 12;6:182-3. doi: 10.1016/j.gdata.2015.09.008. eCollection 2015 Dec.

Inflammation plays a central role in many human diseases. Human parturition also resembles an inflammatory reaction, where progesterone (P4) and progesterone receptors (PRs) have already been demonstrated to suppress contraction-associated gene expression. In our previous studies, we have found...

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Lei K, Sooranna SR, Johnson MR. Expression data from primary culture human myometrial cells. Genom Data. 2015;6:182-3doi: 10.1016/j.gdata.2015.09.008.
Lei, K., Sooranna, S. R., & Johnson, M. R. (2015). Expression data from primary culture human myometrial cells. Genomics data, 6182-3. https://doi.org/10.1016/j.gdata.2015.09.008
Lei, Kaiyu, et al. "Expression data from primary culture human myometrial cells." Genomics data vol. 6 (2015): 182-3. doi: https://doi.org/10.1016/j.gdata.2015.09.008
Lei K, Sooranna SR, Johnson MR. Expression data from primary culture human myometrial cells. Genom Data. 2015 Sep 12;6:182-3. doi: 10.1016/j.gdata.2015.09.008. eCollection 2015 Dec. PMID: 26697367; PMCID: PMC4664736.
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RNA-Seq analysis for indigo biosynthesis pathway genes in Indigofera tinctoria and Polygonum tinctorium.

Genomics data

Sarangi BK, Minami Y, Thul ST.
PMID: 26697377
Genom Data. 2015 Oct 05;6:212-3. doi: 10.1016/j.gdata.2015.09.021. eCollection 2015 Dec.

Natural indigo is the most important blue dye for textile dyeing and valuable secondary metabolite biosynthesized in Indigofera tinctoria and Polygonum tinctorium plants. Present investigation is made to generation of gene resource for pathway enrichment and to understand possible...

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Sarangi BK, Minami Y, Thul ST. RNA-Seq analysis for indigo biosynthesis pathway genes in Indigofera tinctoria and Polygonum tinctorium. Genom Data. 2015;6:212-3doi: 10.1016/j.gdata.2015.09.021.
Sarangi, B. K., Minami, Y., & Thul, S. T. (2015). RNA-Seq analysis for indigo biosynthesis pathway genes in Indigofera tinctoria and Polygonum tinctorium. Genomics data, 6212-3. https://doi.org/10.1016/j.gdata.2015.09.021
Sarangi, Bijaya K, et al. "RNA-Seq analysis for indigo biosynthesis pathway genes in Indigofera tinctoria and Polygonum tinctorium." Genomics data vol. 6 (2015): 212-3. doi: https://doi.org/10.1016/j.gdata.2015.09.021
Sarangi BK, Minami Y, Thul ST. RNA-Seq analysis for indigo biosynthesis pathway genes in Indigofera tinctoria and Polygonum tinctorium. Genom Data. 2015 Oct 05;6:212-3. doi: 10.1016/j.gdata.2015.09.021. eCollection 2015 Dec. PMID: 26697377; PMCID: PMC4664758.
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Global analysis of CPSF2-mediated alternative splicing: Integration of global iCLIP and transcriptome profiling data.

Genomics data

Misra A, Ou J, Zhu LJ, Green MR.
PMID: 26697379
Genom Data. 2015 Oct 03;6:217-21. doi: 10.1016/j.gdata.2015.09.022. eCollection 2015 Dec.

Alternative splicing is a key mechanism for generating proteome diversity, however the mechanisms regulating alternative splicing are poorly understood. Using a genome-wide RNA interference screening strategy, we identified cleavage and polyadenylation specificity factor (CPSF) and symplekin (SYMPK) as cofactors...

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Misra A, Ou J, Zhu LJ, et al. Global analysis of CPSF2-mediated alternative splicing: Integration of global iCLIP and transcriptome profiling data. Genom Data. 2015;6:217-21doi: 10.1016/j.gdata.2015.09.022.
Misra, A., Ou, J., Zhu, L. J., & Green, M. R. (2015). Global analysis of CPSF2-mediated alternative splicing: Integration of global iCLIP and transcriptome profiling data. Genomics data, 6217-21. https://doi.org/10.1016/j.gdata.2015.09.022
Misra, Ashish, et al. "Global analysis of CPSF2-mediated alternative splicing: Integration of global iCLIP and transcriptome profiling data." Genomics data vol. 6 (2015): 217-21. doi: https://doi.org/10.1016/j.gdata.2015.09.022
Misra A, Ou J, Zhu LJ, Green MR. Global analysis of CPSF2-mediated alternative splicing: Integration of global iCLIP and transcriptome profiling data. Genom Data. 2015 Oct 03;6:217-21. doi: 10.1016/j.gdata.2015.09.022. eCollection 2015 Dec. PMID: 26697379; PMCID: PMC4664754.
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Putative alternative polyadenylation (APA) events in the early interaction of Salmonella enterica Typhimurium and human host cells.

Genomics data

Afonso-Grunz F.
PMID: 26697380
Genom Data. 2015 Oct 24;6:222-7. doi: 10.1016/j.gdata.2015.10.001. eCollection 2015 Dec.

No abstract available.

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Afonso-Grunz F. Putative alternative polyadenylation (APA) events in the early interaction of Salmonella enterica Typhimurium and human host cells. Genom Data. 2015;6:222-7doi: 10.1016/j.gdata.2015.10.001.
Afonso-Grunz, F. (2015). Putative alternative polyadenylation (APA) events in the early interaction of Salmonella enterica Typhimurium and human host cells. Genomics data, 6222-7. https://doi.org/10.1016/j.gdata.2015.10.001
Afonso-Grunz, Fabian. "Putative alternative polyadenylation (APA) events in the early interaction of Salmonella enterica Typhimurium and human host cells." Genomics data vol. 6 (2015): 222-7. doi: https://doi.org/10.1016/j.gdata.2015.10.001
Afonso-Grunz F. Putative alternative polyadenylation (APA) events in the early interaction of Salmonella enterica Typhimurium and human host cells. Genom Data. 2015 Oct 24;6:222-7. doi: 10.1016/j.gdata.2015.10.001. eCollection 2015 Dec. PMID: 26697380; PMCID: PMC4664775.
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The conserved HDAC Rpd3 drives transcriptional quiescence in S. cerevisiae.

Genomics data

McKnight JN, Tsukiyama T.
PMID: 26697386
Genom Data. 2015 Oct 17;6:245-8. doi: 10.1016/j.gdata.2015.10.008. eCollection 2015 Dec.

Quiescence is a ubiquitous cell cycle stage conserved from microbes through humans and is essential to normal cellular function and response to changing environmental conditions. We recently reported a massive repressive event associated with quiescence in Saccharomyces cerevisiae, where...

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McKnight JN, Tsukiyama T. The conserved HDAC Rpd3 drives transcriptional quiescence in S. cerevisiae. Genom Data. 2015;6:245-8doi: 10.1016/j.gdata.2015.10.008.
McKnight, J. N., & Tsukiyama, T. (2015). The conserved HDAC Rpd3 drives transcriptional quiescence in S. cerevisiae. Genomics data, 6245-8. https://doi.org/10.1016/j.gdata.2015.10.008
McKnight, Jeffrey N, and Tsukiyama, Toshio. "The conserved HDAC Rpd3 drives transcriptional quiescence in S. cerevisiae." Genomics data vol. 6 (2015): 245-8. doi: https://doi.org/10.1016/j.gdata.2015.10.008
McKnight JN, Tsukiyama T. The conserved HDAC Rpd3 drives transcriptional quiescence in S. cerevisiae. Genom Data. 2015 Oct 17;6:245-8. doi: 10.1016/j.gdata.2015.10.008. eCollection 2015 Dec. PMID: 26697386; PMCID: PMC4664762.
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Showing 1 to 12 of 783 entries